HyTdb

B-10

Hyt-073 | Tetraasterane moieties | Published 2026.06.05

Basic Information

Brigatinib
Linker
Tetraasterane moieties
POIALK — anaplastic lymphoma kinase(ALK)
Degradation PathwayUbiquitin-Proteasome Pathway
Published2026.06.05

Remarks

Chemical Identifiers

SMILESO=C(OC)[C@]12[C@]3(C(OC)=O)C[C@@H]4[C@@H]([C@@]5(C(N6CCN(CC6)C7CCN(CC7)C8=CC=C(C(OC)=C8)NC9=NC=C(C(NC%10=CC=CC=C%10P(C)(C)=O)=N9)Cl)=C)[C@]4(C(OC)=O)C[C@@H]3[C@@H]2C5)C1.[O]
Molecular FormulaC47H57ClN7O9P
InChIInChI=1S/C47H57ClN7O9P/c1-61-36-21-28(11-12-34(36)51-43-49-26-33(48)38(52-43)50-35-9-7-8-10-37(35)65(5,6)60)53-15-13-27(14-16-53)54-17-19-55(20-18-54)39(56)44-22-30-32-24-45(44,40(57)62-2)31-25-47(32,42(59)64-4)46(30,23-29(31)44)41(58)63-3/h7-12,21,26-27,29-32H,13-20,22-25H2,1-6H3,(H2,49,50,51,52)
InChI KeyPZMDTGMZZPZXFG-UHFFFAOYSA-N
IUPAC NameNA
PubChem CIDNA

Basic Properties

TPSAComputing…
RingsComputing…
FSP3Computing…
Heavy Atom CountComputing…

Lipinski RO5

RO5 ViolationComputing…
MWComputing…
ClogPComputing…
HBDComputing…
HBAComputing…
RBComputing…

Hydrophobic Tag Properties

Tag Structure
Tag TypeTetraasterane moieties
Tag SMILESO=C(OC)[C@]12[C@]3(C(OC)=O)C[C@@H]4[C@@H]([C@H]5[C@]4(C(OC)=O)C[C@@H]3[C@@H]2C5)C1
Tag ClogP0.829
HydrophobicityLow(ClogP<2)

Mechanism of Action

POI (Protein of Interest)

POI Nameanaplastic lymphoma kinase(ALK)
GeneALK
UniProt IDQ9UM73

Amino Acid Sequence

MGAIGLLWLLPLLLSTAAVGSGMGTGQRAGSPAAGPPLQPREPLSYSRLQRKSLAVDFVVPSLFRVYARDLLLPPSSSELKAGRPEARGSLALDCAPLLRLLGPAPGVSWTAGSPAPAEARTLSRVLKGGSVRKLRRAKQLVLELGEEAILEGCVGPPGEAAVGLLQFNLSELFSWWIRQGEGRLRIRLMPEKKASEVGREGRLSAAIRASQPRLLFQIFGTGHSSLESPTNMPSPSPDYFTWNLTWIMKDSFPFLSHRSRYGLECSFDFPCELEYSPPLHDLRNQSWSWRRIPSEEASQMDLLDGPGAERSKEMPRGSFLLLNTSADSKHTILSPWMRSSSEHCTLAVSVHRHLQPSGRYIAQLLPHNEAAREILLMPTPGKHGWTVLQGRIGRPDNPFRVALEYISSGNRSLSAVDFFALKNCSEGTSPGSKMALQSSFTCWNGTVLQLGQACDFHQDCAQGEDESQMCRKLPVGFYCNFEDGFCGWTQGTLSPHTPQWQVRTLKDARFQDHQDHALLLSTTDVPASESATVTSATFPAPIKSSPCELRMSWLIRGVLRGNVSLVLVENKTGKEQGRMVWHVAAYEGLSLWQWMVLPLLDVSDRFWLQMVAWWGQGSRAIVAFDNISISLDCYLTISGEDKILQNTAPKSRNLFERNPNKELKPGENSPRQTPIFDPTVHWLFTTCGASGPHGPTQAQCNNAYQNSNLSVEVGSEGPLKGIQIWKVPATDTYSISGYGAAGGKGGKNTMMRSHGVSVLGIFNLEKDDMLYILVGQQGEDACPSTNQLIQKVCIGENNVIEEEIRVNRSVHEWAGGGGGGGGATYVFKMKDGVPVPLIIAAGGGGRAYGAKTDTFHPERLENNSSVLGLNGNSGAAGGGGGWNDNTSLLWAGKSLQEGATGGHSCPQAMKKWGWETRGGFGGGGGGCSSGGGGGGYIGGNAASNNDPEMDGEDGVSFISPLGILYTPALKVMEGHGEVNIKHYLNCSHCEVDECHMDPESHKVICFCDHGTVLAEDGVSCIVSPTPEPHLPLSLILSVVTSALVAALVLAFSGIMIVYRRKHQELQAMQMELQSPEYKLSKLRTSTIMTDYNPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPIEYGPLVEEEEKVPVRPKDPEGVPPLLVSQQAKREEERSPAAPPPLPTTSSGKAAKKPTAAEISVRVPRGPAVEGGHVNMAFSQSNPPSELHKVHGSRNKPTSLWNPTYGSWFTEKPTKKNNPIAKKEPHDRGNLGLEGSCTVPPNVATGRLPGASLLLEPSSLTANMKEVPLFRLRHFPCGNVNYGYQQQGLPLEAATAPGAGHYEDTILKSKNSMNQPGP

3D Structure (/structures/AF-Q9UM73-F1-model_v6.cif)

Loading /structures/AF-Q9UM73-F1-model_v6.cif …

Function

Neuronal receptor tyrosine kinase that is essentially and transiently expressed in specific regions of the central and peripheral nervous systems and plays an important role in the genesis and differentiation of the nervous system. Also acts as a key thinness protein involved in the resistance to weight gain: in hypothalamic neurons, controls energy expenditure acting as a negative regulator of white adipose tissue lipolysis and sympathetic tone to fine-tune energy homeostasis. Following activation by ALKAL2 ligand at the cell surface, transduces an extracellular signal into an intracellular response. In contrast, ALKAL1 is not a potent physiological ligand for ALK. Ligand-binding to the extracellular domain induces tyrosine kinase activation, leading to activation of the mitogen-activated protein kinase (MAPK) pathway. Phosphorylates almost exclusively at the first tyrosine of the Y-x-x-x-Y-Y motif. Induces tyrosine phosphorylation of CBL, FRS2, IRS1 and SHC1, as well as of the MAP kinases MAPK1/ERK2 and MAPK3/ERK1. ALK activation may also be regulated by pleiotrophin (PTN) and midkine (MDK). PTN-binding induces MAPK pathway activation, which is important for the anti-apoptotic signaling of PTN and regulation of cell proliferation. MDK-binding induces phosphorylation of the ALK target insulin receptor substrate (IRS1), activates mitogen-activated protein kinases (MAPKs) and PI3-kinase, resulting also in cell proliferation induction. Drives NF-kappa-B activation, probably through IRS1 and the activation of the AKT serine/threonine kinase. Recruitment of IRS1 to activated ALK and the activation of NF-kappa-B are essential for the autocrine growth and survival signaling of MDK. May function as regulator of gastric epithelial differentiation.

Degradation Pathway

NameUbiquitin-Proteasome Pathway
Assay MethodWB

Mechanism

The ubiquitin-proteasome pathway (UPP) constitutes the principal pathway for protein degradation in eukaryotic cells, mediating the breakdown of target proteins through ubiquitin tagging and subsequent proteasomal degradation. In an ATP-dependent manner, the ubiquitin-activating enzyme (E1) activates ubiquitin (Ub) and conjugates it to a ubiquitin-conjugating enzyme (E2). E3 ligase subsequently catalyzes the transfer of Ub to the target protein, leading to the formation of a polyubiquitin chain that completes the ubiquitination mark. The 19S regulatory particle of the 26S proteasome recognizes this ubiquitination signal and, after deubiquitination, mediates the ATP-dependent delivery of the substrate into the 20S proteasome for degradation.

Description

o elucidate the underlying degradation mechanism of B-7 and B-10, we investigated their dependence on cellular degradation pathways. H3122 cells were pretreated for 4 h with either the proteasome inhibitor MG132 (2 μM) or the autophagy/lysosome inhibitor chloroquine (100 μM) followed by co-treatment with B-10 (2 μM) for 24 h. As shown in Fig. 4D, ALK degradation by B-10 was markedly suppressed by MG132, but remained largely unaffected by chloroquine. These findings indi cated that ALK degradation induced by B-10 was primarily mediated by the proteasomal pathway.

Activity Data

TypeIC50
Value97.77 nM
POI NameALK
Cell LineH3122
Cell Line IDCVCL_5160
Assay MethodCellTiter-Glo assay
Reference10.1016/j.bioorg.2026.109674

Description

The antiproliferative capacity of the B-series compounds was first assessed in H3122 cells harboring the EML4–ALK fusion protein, using Brigatinib as positive control. Notably, B-7 was the most potent compound in the B-series (IC50 = 68.98 nM), followed by B-10 (IC50 = 97.77 nM) and B-6 (IC50 = 162.34 nM);The inhibitory activities of B-6, B-7, B-9, and B-10 against the ALK were evaluated with Brigatinib as a positive control. As summarized shown in Table 2 and Fig. S2 (the corresponding inhibition curves), all selected compounds maintained potent inhibition of ALK, with IC50 values of 1.24 nM (B-6), 0.74 nM (B-7), 0.92 nM (B-9), and 1.20 nM (B10).

TypeIC50
Value1.20 nM
POI NameALK
Cell Line/
Cell Line ID/
Assay MethodADP-Glo Kinase Assay
Reference10.1016/j.bioorg.2026.109674

Description

The inhibitory activities of B-6, B-7, B-9, and B-10 against the ALK were evaluated with Brigatinib as a positive control. As summarized shown in Table 2 and Fig. S2 (the corresponding inhibition curves), all selected compounds maintained potent inhibition of ALK, with IC50 values of 1.24 nM (B-6), 0.74 nM (B-7), 0.92 nM (B-9), and 1.20 nM (B10).

Disease Information

DiseaseICD-11Source
Lung adenocarcinoma2C25.0Cell Line Origin
ALK-positive large B-cell lymphoma2A81.8Gene-Disease Association
Anaplastic large cell lymphomaXH1LC0Gene-Disease Association
GanglioneuroblastomaXH77W7Gene-Disease Association
GanglioneuromaXH03L9Gene-Disease Association
Infant-type hemispheric gliomaXH4ZM8Gene-Disease Association
Inflammatory myofibroblastic tumorXH66Z0Gene-Disease Association
Neuroblastoma2D11.2Gene-Disease Association
Alk-Positive Anaplastic Large Cell Lymphoma2A90.AGene-Disease Association
:Aneurysmal Bone CystsFB80.6Gene-Disease Association
Hereditary Leiomyomatosis And Renal Cell Cancer2C90.0Gene-Disease Association