HyTdb

Compound 2

HyT-066 | Adamantane | Published 2026.02.12

Basic Information

Oxophenylpropenyl Furylsacylic Acids (OPPFSAs)
Linker
Adamantane
POILDHA — L-lactate dehydrogenase A chain(LDHA); HAO1 — 2-Hydroxyacid oxidase 1(glycolate oxidase)
Degradation PathwayAutophagy-lysosomal Pathway
Published2026.02.12

Remarks

Chemical Identifiers

SMILESO=C(/C=C/C1=CC=C(C2=CC=C(C(C(O)=O)=C2)O)O1)C3=CC=C(C#CCCCCNCC4(C[C@@H](C5)C6)C[C@@H]6C[C@@H]5C4)C=C3
Molecular FormulaC37H39NO5
InChIInChI=1S/C37H39NO5/c39-33(14-11-31-12-15-35(43-31)30-10-13-34(40)32(20-30)36(41)42)29-8-6-25(7-9-29)5-3-1-2-4-16-38-24-37-21-26-17-27(22-37)19-28(18-26)23-37/h6-15,20,26-28,38,40H,1-2,4,16-19,21-24H2,(H,41,42)/b14-11+/t26-,27+,28-,37?
InChI KeyZBZRDGFXLBXFKU-GKRTZZQMSA-N
IUPAC Name5-[5-[(E)-3-[4-[6-(1-adamantylmethylamino)hex-1-ynyl]phenyl]-3-oxoprop-1-enyl]furan-2-yl]-2-hydroxybenzoic acid
PubChem CID178739163

Basic Properties

TPSAComputing…
RingsComputing…
FSP3Computing…
Heavy Atom CountComputing…

Lipinski RO5

RO5 ViolationComputing…
MWComputing…
ClogPComputing…
HBDComputing…
HBAComputing…
RBComputing…

Hydrophobic Tag Properties

Tag Structure
Tag TypeAdamantane
Tag SMILESC1(CC2C3)CC(C2)CC3C1
Tag ClogP5.022
HydrophobicityHigh(ClopP>5)

Mechanism of Action

POI (Protein of Interest)

POI NameL-lactate dehydrogenase A chain(LDHA)
GeneLDHA
UniProt IDP00338

Amino Acid Sequence

MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKELQF

3D Structure (/structures/AF-P00338-F1-model_v6.cif)

Loading /structures/AF-P00338-F1-model_v6.cif …

Function

Interconverts simultaneously and stereospecifically pyruvate and lactate with concomitant interconversion of NADH and NAD+.

POI Name2-Hydroxyacid oxidase 1(glycolate oxidase)
GeneHAO1
UniProt IDQ9UJM8

Amino Acid Sequence

MLPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKNPLAVSKI

3D Structure (/structures/AF-Q9UJM8-F1-model_v6.cif)

Loading /structures/AF-Q9UJM8-F1-model_v6.cif …

Function

Broad substrate specificity (S)-2-hydroxy-acid oxidase that preferentially oxidizes glycolate. The glyoxylate produced by the oxidation of glycolate can then be utilized by alanine-glyoxylate aminotransferase for the peroxisomal synthesis of glycine; this pathway appears to be an important step for the detoxification of glyoxylate which, if allowed to accumulate, may be metabolized to oxalate with formation of kidney stones . Can also catalyze the oxidation of glyoxylate, and long chain hydroxyacids such as 2-hydroxyhexadecanoate and 2-hydroxyoctanoate, albeit with much lower catalytic efficiency. Active in vitro with the artificial electron acceptor 2,6-dichlorophenolindophenol (DCIP), but O2 is believed to be the physiological electron acceptor, leading to the production of H2O2. Is not active on L-lactate and 2-hydroxybutanoate .

Degradation Pathway

NameAutophagy-lysosomal Pathway
Assay MethodWB

Mechanism

The autophagy-lysosomal pathway (ALP) is capable of degrading a broader range of substrates, including longer-lived and larger misfolded proteins and damaged organelles. ALP is classified into three subtypes: microautophagy, chaperone-mediated autophagy (CMA), and macroautophagy. In microautophagy, substrates are directly sequestered and degraded by lysosomes and late endosomes via membrane protrusion and invagination. In CMA, HSPA8/HSC70 recognizes specific substrates containing KFERQ-like sequences; these substrates subsequently bind to LAMP2A on the lysosomal surface and are delivered into lysosomes for degradation. In macroautophagy, substrates are encapsulated through the formation of double-membrane autophagosomes, which subsequently fuse with lysosomes to degrade the substrates.

Description

First, we cotreated cells with compound 2 and MG-132, a well-characterized proteasome inhibitor.37 No significant increase in LDHA protein levels was observed in cells treated with 2 and MG-132, compared to cells treated with compound 2 alone, therefore ruling out proteasome involvement in this process (Figure 4F). To determine whether compound 2 induces LDHA degradation via the autophagy-lysosomal pathway, we silenced autophagy-related gene 5 (Atg5) using siRNA (siAtg5). The encoded protein, ATG5, is essential for autophagosome formation and has previously been shown to be required for the action of compounds that engage this pathway.38 Transfection with siAtg5 reduced ATG5 expression by approximately 70% (Figure S75). Under these conditions, the reduction in LDHA protein levels induced by compound 2 was abolished, and LDHA protein levels were significantly higher than in cells treated with the scrambled siRNA (siScr) (Figure 4G). These results indicate that compound 2 promotes LDHA degradation via an autophagy-dependent lysosomal pathway.

Activity Data

TypeIC50
Value1.05 μM
POI NamehGO
Assay MethodKinetic Fluorometric Assay
Reference10.1021/acs.jmedchem.5c02055

Description

For hGO, most IC50 values ranged between 0.8 and 5 μM, whereas for hLDHA, many compounds exhibited nanomolar inhibitory activity. Compound 2 exhibited excellent IC50 values of 1.05 μM and 53 nM, respectively

TypeIC50
Value53 nM
POI NamehLDHA
Assay MethodKinetic Fluorometric Assay
Reference10.1021/acs.jmedchem.5c02055

Description

For hGO, most IC50 values ranged between 0.8 and 5 μM, whereas for hLDHA, many compounds exhibited nanomolar inhibitory activity. Compound 2 exhibited excellent IC50 values of 1.05 μM and 53 nM, respectively.

TypeKi
Value390 nM
POI NamehGO
Assay MethodKinetic Fluorometric Assay
Reference10.1021/acs.jmedchem.5c02055

Description

We report the development of compound 2, a dual GO/LDHA inhibitor (Ki = 390 and 40 nM, respectively) that also promotes hydrophobic tag-mediated autophagic degradation of LDHA.

TypeKi
Value40 nM
POI NamehLDHA
Assay MethodKinetic Fluorometric Assay
Reference10.1021/acs.jmedchem.5c02055

Description

We report the development of compound 2, a dual GO/LDHA inhibitor (Ki = 390 and 40 nM, respectively) that also promotes hydrophobic tag-mediated autophagic degradation of LDHA

Disease Information

DiseaseICD-11Source
Glycogen storage disease due to lactate dehydrogenase deficiency5C51.3Gene-Disease Association
Glycogen storage disease5C51.3Gene-Disease Association
Fanconi-Bickel Syndrome5C51.3Gene-Disease Association
metabolic disease5D2ZGene-Disease Association
Primary hyperoxaluria type 15C51.20Gene-Disease Association