HyTdb

Z2d

HyT-024 | 4,4′-bifluorobenzhydrylpiperazinyl | Published 2024.07.04

Basic Information

R3
Linker
4,4′-bifluorobenzhydrylpiperazinyl
POICD274 — Programmed cell death 1 ligand 1(PD-L1)
Degradation PathwayUbiquitin-Proteasome Pathway
Published2024.07.04

Remarks

Chemical Identifiers

SMILESCC1=C(C=CC=C1C2=CC=CC=C2)C3=NC=C(C=C3)CNCCOCCOCCC(NN4CCN(CC4)C(C5=CC=C(C=C5)F)C6=CC=C(C=C6)F)=O
Molecular FormulaC43H47F2N5O3
InChIInChI=1S/C43H47F2N5O3/c1-32-39(34-6-3-2-4-7-34)8-5-9-40(32)41-19-10-33(31-47-41)30-46-21-27-53-29-28-52-26-20-42(51)48-50-24-22-49(23-25-50)43(35-11-15-37(44)16-12-35)36-13-17-38(45)18-14-36/h2-19,31,43,46H,20-30H2,1H3,(H,48,51)
InChI KeyBMWVMUDUCDFIPJ-UHFFFAOYSA-N
IUPAC NameN-[4-[bis(4-fluorophenyl)methyl]piperazin-1-yl]-3-[2-[2-[[6-(2-methyl-3-phenylphenyl)-3-pyridinyl]methylamino]ethoxy]ethoxy]propanamide
PubChem CID178317912

Basic Properties

TPSAComputing…
RingsComputing…
FSP3Computing…
Heavy Atom CountComputing…

Lipinski RO5

RO5 ViolationComputing…
MWComputing…
ClogPComputing…
HBDComputing…
HBAComputing…
RBComputing…

Hydrophobic Tag Properties

Tag Structure
Tag Type4,4′-bifluorobenzhydrylpiperazinyl
Tag SMILESFC(C=C1)=CC=C1C(C2=CC=C(C=C2)F)N3CCNCC3
Tag ClogP3.509
HydrophobicityMedium(2<ClogP<5)

Mechanism of Action

POI (Protein of Interest)

POI NameProgrammed cell death 1 ligand 1(PD-L1)
GeneCD274
UniProt IDQ9NZQ7

Amino Acid Sequence

MRIFAVFIFMTYWHLLNAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNERTHLVILGAILLCLGVALTFIFRLRKGRMMDVKKCGIQDTNSKKQSDTHLEET

3D Structure (/structures/AF-Q9NZQ7-F1-model_v6.cif)

Loading /structures/AF-Q9NZQ7-F1-model_v6.cif …

Function

Plays a critical role in induction and maintenance of immune tolerance to self. As a ligand for the inhibitory receptor PDCD1/PD-1, modulates the activation threshold of T-cells and limits T-cell effector response. Through a yet unknown activating receptor, may costimulate T-cell subsets that predominantly produce interleukin-10 (IL10). Can also act as a transcription coactivator: in response to hypoxia, translocates into the nucleus via its interaction with phosphorylated STAT3 and promotes transcription of GSDMC, leading to pyroptosis. The PDCD1-mediated inhibitory pathway is exploited by tumors to attenuate anti-tumor immunity and escape destruction by the immune system, thereby facilitating tumor survival. The interaction with PDCD1/PD-1 inhibits cytotoxic T lymphocytes (CTLs) effector function (By similarity). The blockage of the PDCD1-mediated pathway results in the reversal of the exhausted T-cell phenotype and the normalization of the anti-tumor response, providing a rationale for cancer immunotherapy (By similarity).

Degradation Pathway

NameUbiquitin-Proteasome Pathway
Assay MethodWB

Mechanism

The ubiquitin-proteasome pathway (UPP) constitutes the principal pathway for protein degradation in eukaryotic cells, mediating the breakdown of target proteins through ubiquitin tagging and subsequent proteasomal degradation. In an ATP-dependent manner, the ubiquitin-activating enzyme (E1) activates ubiquitin (Ub) and conjugates it to a ubiquitin-conjugating enzyme (E2). E3 ligase subsequently catalyzes the transfer of Ub to the target protein, leading to the formation of a polyubiquitin chain that completes the ubiquitination mark. The 19S regulatory particle of the 26S proteasome recognizes this ubiquitination signal and, after deubiquitination, mediates the ATP-dependent delivery of the substrate into the 20S proteasome for degradation.

Description

To explore whether Z2d/Z3d promoted PD-L1 degradation through the proteasome pathway, NCI-H460 cells were treated with Z2d/Z3d in the presence or absence of proteasome inhibitor MG132. As a result (Fig. 6A), the reduction of PD-L1 protein levels by Z2d/ Z3d was counteracted by MG132, which indicated that Z2d/ Z3d degraded PD-L1 through the proteasome pathway.

Activity Data

Disease Information

DiseaseICD-11Source
Lung large cell carcinoma2C25.3Cell Line Origin
FibrosarcomaXH4EP1Cell Line Origin
Cervical Cancer2C77Gene-Disease Association
Classical Hodgkin lymphoma2B30.1Gene-Disease Association
Acute Myeloid Leukemia2A60.3ZGene-Disease Association
acute lymphoblastic leukaemia2B33.3Gene-Disease Association
Soft Tissue SarcomaXH4UM7Gene-Disease Association
Ovarian Cancer2C73.ZGene-Disease Association