HyTdb

MIC

HyT-007 | m-carborane | Published 2021.10.26

Basic Information

Maleimide
Linker
m-carborane
POIALB — Bovine Serum Albumin(BSA)
Degradation PathwayUbiquitin-Proteasome Pathway
Published2021.10.26

Remarks

Chemical Identifiers

SMILESO=C(C12BBBBBBBBC(B2)B1)NCCCC(NCCN3C(C=CC3=O)=O)=O
Molecular FormulaC13H25B10N3O4
InChIInChI=1S/C13H25B10N3O4/c27-8(24-6-7-26-9(28)3-4-10(26)29)2-1-5-25-11(30)13-14-12(15-13)16-18-20-22-23-21-19-17-13/h3-4,12,14-23H
InChI KeyNYGLDKKCSKCYRT-UHFFFAOYSA-N
IUPAC NameNA
PubChem CIDNA

Basic Properties

TPSAComputing…
RingsComputing…
FSP3Computing…
Heavy Atom CountComputing…

Lipinski RO5

RO5 ViolationComputing…
MWComputing…
ClogPComputing…
HBDComputing…
HBAComputing…
RBComputing…

Hydrophobic Tag Properties

Tag Structure
Tag Typem-carborane
Tag SMILESC12BBBBBBBBC(B2)B1
Tag ClogP1.408
HydrophobicityLow(ClogP<2)

Mechanism of Action

POI (Protein of Interest)

POI NameBovine Serum Albumin(BSA)
GeneALB
UniProt IDP02769

Amino Acid Sequence

MKWVTFISLLLLFSSAYSRGVFRRDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPFDEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEPERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKECCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEKLGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLPDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVVSTQTALA

3D Structure (/structures/AF-P02769-F1-model_v6.cif)

Loading /structures/AF-P02769-F1-model_v6.cif …

Function

Binds water, Ca2+, Na+, K+, fatty acids, hormones, bilirubin and drugs. Its main function is the regulation of the colloidal osmotic pressure of blood. Major zinc transporter in plasma, typically binds about 80% of all plasma zinc (By similarity). Major calcium and magnesium transporter in plasma, binds approximately 45% of circulating calcium and magnesium in plasma (Probable). Potentially has more than two calcium-binding sites and might additionally bind calcium in a non-specific manner. The shared binding site between zinc and calcium at residue Asp-272 suggests a crosstalk between zinc and calcium transport in the blood (Probable). The rank order of affinity is zinc > calcium > magnesium (Probable). Binds to the bacterial siderophore enterobactin and inhibits enterobactin-mediated iron uptake of E.coli, and may thereby limit the utilization of iron and growth of enteric bacteria such as E.coli. Does not prevent iron uptake by the bacterial siderophore aerobactin.

Degradation Pathway

NameUbiquitin-Proteasome Pathway
Assay MethodWB

Mechanism

The ubiquitin-proteasome pathway (UPP) constitutes the principal pathway for protein degradation in eukaryotic cells, mediating the breakdown of target proteins through ubiquitin tagging and subsequent proteasomal degradation. In an ATP-dependent manner, the ubiquitin-activating enzyme (E1) activates ubiquitin (Ub) and conjugates it to a ubiquitin-conjugating enzyme (E2). E3 ligase subsequently catalyzes the transfer of Ub to the target protein, leading to the formation of a polyubiquitin chain that completes the ubiquitination mark. The 19S regulatory particle of the 26S proteasome recognizes this ubiquitination signal and, after deubiquitination, mediates the ATP-dependent delivery of the substrate into the 20S proteasome for degradation.

Description

To further investigate the mechanism of the carborane-induced BSA degradation, MIC − BSA conjugate-transfected LNCaP was treated with MG-132, a proteasome inhibitor, and HLI-373, an E3 ligase inhibitor (Figure 5C,D). The degradation of MIC − BSA (3/1) and MIC − BSA (10/1) was suppressed in LNCaP treated with MG-132 or HLI-373, whereas the value of unmodified BSA transfected into LNCaP changed negligibly. These results indicate that the carborane conjugation of proteins could induce conjugated protein degradation via the 26S proteasome pathway involving ubiquitin E3 ligase. However, it has been reported that lysine residues of protein play an essential role in ubiquitination via E3 ligase.37 From the results shown in Figure 4B, the exposure of lysine residues on BSA was increased with the number of carboranes conjugated. Therefore, the carborane conjugation of proteins induced the exposure of lysine residues on the conjugated protein via microscopic conformational changes, resulting in degradation via the ubiquitin E3 ligase-related proteasome.

Activity Data

Disease Information

DiseaseICD-11Source
albumin5DOYGene-Disease Association
Soft Tissue SarcomaXH4UM7Gene-Disease Association