HyTdb

TX2-121-1

HyT-002 | Adamantane | Published 2014.10.19

Basic Information

TX1-85-1
Linker
Adamantane
POIERBB3 — Receptor tyrosine-protein kinase erbB-3 (HER3)
Degradation PathwayUbiquitin-Proteasome Pathway
Published2014.10.19

Remarks

Chemical Identifiers

SMILESO=C([C@@H](CCC12CC3CC(CC(C2)C3)C1)C)NCCN4CCC(CC4)N5N=C(C6=C(N=CN=C65)N)C7=CC=C(C(NC(C=C)=O)=C7)OC8=CC=CC=C8
Molecular FormulaC42H52N8O3
InChIInChI=1S/C42H52N8O3/c1-3-36(51)47-34-22-31(9-10-35(34)53-33-7-5-4-6-8-33)38-37-39(43)45-26-46-40(37)50(48-38)32-12-16-49(17-13-32)18-15-44-41(52)27(2)11-14-42-23-28-19-29(24-42)21-30(20-28)25-42/h3-10,22,26-30,32H,1,11-21,23-25H2,2H3,(H,44,52)(H,47,51)(H2,43,45,46)/t27-,28?,29?,30?,42?/m1/s1
InChI KeyGKJWHLDKQULMHJ-PZMWFESPSA-N
IUPAC Name(2R)-4-(1-adamantyl)-N-[2-[4-[4-amino-3-[4-phenoxy-3-(prop-2-enoylamino)phenyl]pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]ethyl]-2-methylbutanamide
PubChem CID78243759

Basic Properties

TPSAComputing…
RingsComputing…
FSP3Computing…
Heavy Atom CountComputing…

Lipinski RO5

RO5 ViolationComputing…
MWComputing…
ClogPComputing…
HBDComputing…
HBAComputing…
RBComputing…

Hydrophobic Tag Properties

Tag Structure
Tag TypeAdamantane
Tag SMILESC1(CC(C2)C3)CC2CC3C1
Tag ClogP5.022
HydrophobicityHigh (ClogP > 5)

Mechanism of Action

POI (Protein of Interest)

POI NameReceptor tyrosine-protein kinase erbB-3 (HER3)
GeneERBB3
UniProt IDP21860

Amino Acid Sequence

MRANDALQVLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTNSSHALRQLRLTQLTEILSGGVYIEKNDKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPHGVLGAKGPIYKYPDVQNECRPCHENCTQGCKGPELQDCLGQTLVLIGKTHLTMALTVIAGLVVIFMMLGGTFLYWRGRRIQNKRAMRRYLERGESIEPLDPSEKANKVLARIFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARDPPRYLVIKRESGPGIAPGPEPHGLTNKKLEEVELEPELDLDLDLEAEEDNLATTTLGSALSLPVGTLNRPRGSQSLLSPSSGYMPMNQGNLGESCQESAVSGSSERCPRPVSLHPMPRGCLASESSEGHVTGSEAELQEKVSMCRSRSRSRSPRPRGDSAYHSQRHSLLTPVTPLSPPGLEEEDVNGYVMPDTHLKGTPSSREGTLSSVGLSSVLGTEEEDEDEEYEYMNRRRRHSPPHPPRPSSLEELGYEYMDVGSDLSASLGSTQSCPLHPVPIMPTAGTTPDEDYEYMNRQRDGGGPGGDYAAMGACPASEQGYEEMRAFQGPGHQAPHVHYARLKTLRSLEATDSAFDNPDYWHSRLFPKANAQRT

3D Structure (/structures/AF-P21860-F1-model_v6.cif)

Loading /structures/AF-P21860-F1-model_v6.cif …

Function

Tyrosine-protein kinase that plays an essential role as cell surface receptor for neuregulins. Binds to neuregulin-1 (NRG1) and is activated by it; ligand-binding increases phosphorylation on tyrosine residues and promotes its association with the p85 subunit of phosphatidylinositol 3-kinase. May also be activated by CSPG5. Involved in the regulation of myeloid cell differentiation.

Degradation Pathway

NameUbiquitin-Proteasome Pathway
Assay MethodWB

Mechanism

In an ATP-dependent manner, the ubiquitin-activating enzyme (E1) activates ubiquitin (Ub) and conjugates it to a ubiquitin-conjugating enzyme (E2). E3 ligase subsequently catalyzes the transfer of Ub to the target protein, leading to the formation of a polyubiquitin chain that completes the ubiquitination mark. The 19S regulatory particle of the 26S proteasome recognizes this ubiquitination signal and, after deubiquitination, mediates the ATP-dependent delivery of the substrate into the 20S proteasome for degradation.

Description

(a) Proteasome degradation pathway inhibitors block TX2-121-1 mediated effects while Hsp70 and Hsp90 inhibitors potentiate them. The Hsp90 inhibitor 17-AAG and the Hsp70 inhibitor 116-9e decrease detectable levels of Her3 protein in PC9 GR4 cells while the proteasome inhibitor MG132 protects Her3 from TX2-121-1 induced degradation, suggesting that the proteasome plays a central role in the degradation mechanism. (b) Cartoon for adamantane mediated degradation of Her3. Bulky hydrophobic chemical moieties are directed in cells to the proteasome degradation pathway. By tethering these substituents to Her3 using covalent chemistry, Her3 is also directed to the proteasome.

Activity Data

TypeIC50
Value49.2 nM
POI NameHER3
Assay MethodLanthaScreen ®technology (Life Technologies) kinase binding assay
Reference10.1038/nchembio.1658

Description

A series of compounds possessing various linkers connecting TX1-85-1 with an adamantane moiety were synthesized and confirmed to bind potently with Her3, identifying a representative molecule (TX2-121-1) (6) demonstrating an IC 50 of 49.2 nM in the protein based binding assay

TypeEC50
Value5.5μM
POI NameC721S mutant Her3
Cell LinePC9 GR4
Cell Line IDCVCL_DH34
Assay MethodCellTiter-GloLuminescent Assay
Reference10.1038/nchembio.1658

Description

We performed cell proliferation assays against PC9 GR4 cells expressing either wild-type or C721S mutant Her3 with TX1-85-1 and TX2-121-1 and their corresponding propylamide controls (TX1-85-3 (9) and TX2-135-2) in order to investigate the importance of the electrophilic acrylamide and the adamantane moiety. These experiments demonstrate a 6 fold rightward shift in EC 50 for C721S Her3 (EC 50 = 5.5 μM for PC9 GR4 Her3 C721S) versus wild-type Her 3 expressing cells (EC 50 =0.9 μM for PC9 GR4 WT Her3) only for TX2-121-1 which possesses both an electrophilic warhead and an adamantane moiety and the downstream signaling western blot is consistent with the antiproliferation result

TypeEC50
Value0.9μM
POI NameHer3 WT
Cell LinePC9 GR4
Cell Line IDCVCL_DH34
Assay MethodCellTiter-GloLuminescent Assay
Reference10.1038/nchembio.1658

Description

We performed cell proliferation assays against PC9 GR4 cells expressing either wild-type or C721S mutant Her3 with TX1-85-1 and TX2-121-1 and their corresponding propylamide controls (TX1-85-3 (9) and TX2-135-2) in order to investigate the importance of the electrophilic acrylamide and the adamantane moiety. These experiments demonstrate a 6 fold rightward shift in EC 50 for C721S Her3 (EC 50 = 5.5 μM for PC9 GR4 Her3 C721S) versus wild-type Her 3 expressing cells (EC 50 =0.9 μM for PC9 GR4 WT Her3) only for TX2-121-1 which possesses both an electrophilic warhead and an adamantane moiety and the downstream signaling western blot is consistent with the antiproliferation result

Disease Information

DiseaseICD-11Source
lung adenocarcinoma2C25.0Cell Line Origin
Lethal congenital contracture syndrome 2 (LCCS2)LD26.4YGene-Disease Association
Hirschsprung diseaseLB16.1Gene-Disease Association
Malignant neoplasms of bladder2C94Gene-Disease Association
Breast Cancer2C6ZGene-Disease Association
Distal arthrogryposisLD26.4YGene-Disease Association
Congenital Myasthenic Syndrome8C61Gene-Disease Association
Ovarian Cancer2C73.ZGene-Disease Association