HyTdb

Compound 7

HyT-001 | tert-Butyl(diphenyl)silane | Published 2024.12.02

Basic Information

Gefitinib
linker
tert-Butyl(diphenyl)silane
POIEGFR — Epidermal growth factor receptor
Degradation PathwayUbiquitin-Proteasome Pathway
Published2024.12.02

Remarks

Chemical Identifiers

SMILESCOC1=CC2=C(C=C1OCCN3C=C(N=N3)CCCO[Si](C(C)(C)C)(C4=CC=CC=C4)C5=CC=CC=C5)C(NC6=CC(Cl)=C(C=C6)F)=NC=N2
Molecular FormulaC38H40ClFN6O3Si
InChIInChI=1S/C38H40ClFN6O3Si/c1-38(2,3)50(29-13-7-5-8-14-29,30-15-9-6-10-16-30)49-20-11-12-28-25-46(45-44-28)19-21-48-36-23-31-34(24-35(36)47-4)41-26-42-37(31)43-27-17-18-33(40)32(39)22-27/h5-10,13-18,22-26H,11-12,19-21H2,1-4H3,(H,41,42,43)
InChI KeyVXQINLRRZZVYKQ-UHFFFAOYSA-N
IUPAC Name6-[2-[4-[3-[tert-butyl(diphenyl)silyl]oxypropyl]triazol-1-yl]ethoxy]-N-(3-chloro-4-fluorophenyl)-7-methoxyquinazolin-4-amine
PubChem CID178316976

Basic Properties

TPSAComputing…
RingsComputing…
FSP3Computing…
Heavy Atom CountComputing…

Lipinski RO5

RO5 ViolationComputing…
MWComputing…
ClogPComputing…
HBDComputing…
HBAComputing…
RBComputing…

Hydrophobic Tag Properties

Tag Structure
Tag Typetert-Butyl(diphenyl)silane
Tag SMILESCC(C)(C)[SiH](C1=CC=CC=C1)C2=CC=CC=C2
Tag ClogP5.179
HydrophobicityHigh (ClogP > 5)

Mechanism of Action

POI (Protein of Interest)

POI NameEpidermal growth factor receptor
GeneEGFR
UniProt IDP00533

Amino Acid Sequence

MRPSGTAGAALLALLAALCPASRALEEKKVCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYVQRNYDLSFLKTIQEVAGYVLIALNTVERIPLENLQIIRGNMYYENSYALAVLSNYDANKTGLKELPMRNLQEILHGAVRFSNNPALCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENSCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCNLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPAGVMGENNTLVWKYADAGHVCHLCHPNCTYGCTGPGLEGCPTNGPKIPSIATGMVGALLLLLVVALGIGLFMRRRHIVRKRTLRRLLQERELVEPLTPSGEAPNQALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRYLVIQGDERMHLPSPTDSNFYRA

3D Structure (/structures/AF-P00533-F1-model_v6.cif)

Loading /structures/AF-P00533-F1-model_v6.cif …

Function

Receptor tyrosine kinase binding ligands of the EGF family and activating several signaling cascades to convert extracellular cues into appropriate cellular responses. Known ligands include EGF, TGFA/TGF-alpha, AREG, epigen/EPGN, BTC/betacellulin, epiregulin/EREG and HBEGF/heparin-binding EGF. Ligand binding triggers receptor homo- and/or heterodimerization and autophosphorylation on key cytoplasmic residues. The phosphorylated receptor recruits adapter proteins like GRB2 which in turn activates complex downstream signaling cascades. Activates at least 4 major downstream signaling cascades including the RAS-RAF-MEK-ERK, PI3 kinase-AKT, PLCgamma-PKC and STATs modules. May also activate the NF-kappa-B signaling cascade. Also directly phosphorylates other proteins like RGS16, activating its GTPase activity and probably coupling the EGF receptor signaling to the G protein-coupled receptor signaling. Also phosphorylates MUC1 and increases its interaction with SRC and CTNNB1/beta-catenin. Positively regulates cell migration via interaction with CCDC88A/GIV which retains EGFR at the cell membrane following ligand stimulation, promoting EGFR signaling which triggers cell migration. Plays a role in enhancing learning and memory performance (By similarity). Plays a role in mammalian pain signaling (long-lasting hypersensitivity) (By similarity). Isoform 2 may act as an antagonist of EGF action. (Microbial infection) Acts as a receptor for hepatitis C virus (HCV) in hepatocytes and facilitates its cell entry. Mediates HCV entry by promoting the formation of the CD81-CLDN1 receptor complexes that are essential for HCV entry and by enhancing membrane fusion of cells expressing HCV envelope glycoproteins.

Degradation Pathway

NameUbiquitin-Proteasome Pathway
Assay MethodWB

Mechanism

The ubiquitin-proteasome pathway (UPP) constitutes the principal pathway for protein degradation in eukaryotic cells, mediating the breakdown of target proteins through ubiquitin tagging and subsequent proteasomal degradation. In an ATP-dependent manner, the ubiquitin-activating enzyme (E1) activates ubiquitin (Ub) and conjugates it to a ubiquitin-conjugating enzyme (E2). E3 ligase subsequently catalyzes the transfer of Ub to the target protein, leading to the formation of a polyubiquitin chain that completes the ubiquitination mark. The 19S regulatory particle of the 26S proteasome recognizes this ubiquitination signal and, after deubiquitination, mediates the ATP-dependent delivery of the substrate into the 20S proteasome for degradation.

Description

To investigate the degradation pathway of EGFR induced by compound7, cells were pretreated with MG-132 (a proteasome inhibitor), 3-MA (a lysosome inhibitor), and PYR 41 (an E1 ligase inhibitor) in vitro. Compared with the 3-MA treatment group, pretreatment withMG-132 and PYR-41 markedly attenuated EGFR degradation (Figure 2E), implicating the UPS pathway in compound 7-mediated EGFR degrdation. The results of further experiments revealed that compound 7 treatment significantly reduced the half-time of EGFR in the presence of Cycloheximide (CHX, a protein synthesis inhibitor) (Figure 2F,G) and increased its ubiquitination levels (Figure 2H), supporting USP-mediated degradation.

Activity Data

TypeDC50
Value0.75±0.1 μM
POI NameEGFR
Cell LineHCC-827
Cell Line IDCVCL_2063
Assay MethodWB
Reference10.1021/acs.jmedchem.4c02273

Description

To assess the impact of compound 7 on EGFR degradation, Western blotting was conducted on PC-9and HCC-827 cells, which were subjected to serum starvation for 8 h and then treated with varying concentrations and durations of compound 7. Results indicated that compound 7 effectively induced a dose-dependent decrease in mutant EGFR levels(DC50=1.42 and 0.75 μM for EGFR respectively; Figure 2A,B)and time-dependent reduction(Figure 2C)

TypeDC50
Value1.42±0.3 μM
POI NameEGFR
Cell LinePC-9
Cell Line IDCVCL_B260
Assay MethodWB
ReferenceTo assess the impact of compound 7 on EGFR degradation, Western blotting was conducted on PC-9and HCC-827 cells, which were subjected to serum starvation for 8 h and then treated with varying concentrations and durations of compound 7. Results indicated t

Description

To assess the impact of compound 7 on EGFR degradation, Western blotting was conducted on PC-9and HCC-827 cells, which were subjected to serum starvation for 8 h and then treated with varying concentrations and durations of compound 7. Results indicated that compound 7 effectively induced a dose-dependent decrease in mutant EGFR levels(DC50=1.42 and 0.75 μM for EGFR respectively; Figure 2A,B)and time-dependent reduction(Figure 2C).

TypeIC50
Value0.09 μM
POI NameEGFR
Cell LineHCC-827
Cell Line IDCVCL_2063
Assay MethodCCK-8 assay
Reference10.1021/acs.jmedchem.4c02273

Description

Initially, the IC50 values for compound 7 against two NSCLC cell lines, HCC-827 and PC-9, were determined using a CCK-8 cell viability assay, revealing its notable cytotoxicity (IC50 = 0.09 and 0.34 μM, respectively).

TypeIC50
Value0.34 μM
POI NameEGFR
Cell LinePC-9
Cell Line IDCVCL_B260
Assay MethodCCK-8 assay
Reference10.1021/acs.jmedchem.4c02273

Description

Initially, the IC50 values for compound 7 against two NSCLC cell lines, HCC-827 and PC-9, were determined using a CCK-8 cell viability assay, revealing its notable cytotoxicity (IC50 = 0.09 and 0.34 μM, respectively).

PK (Pharmacokinetics)

RouteDoseT1/2TmaxCmaxAUCMRTCLFVdVz
I.V.1 mg/kg2.18±0.02 h0.08±0.01 h2212.85±149.32 ng/mL(0-t) 2164.76±184.92 ng/mL(0-t) 2.72±0.24 hNANANANA
P.O.10 mg/kg1.29±0.67 h1.00±0.01 h682.69±67.86 ng/mL(0-t) 1876.65±196.28 h*ng/mL(0-t) 2.57±0.68 hNA8.67%NANA

Disease Information

DiseaseICD-11Source
lung adenocarcinoma2C25.0Cell Line Origin
Giant cell glioblastoma2A00.00Gene-Disease Association
Glioblastoma2A00.00Gene-Disease Association
Gliosarcoma2A00.00Gene-Disease Association
Adenocarcinoma2D40Gene-Disease Association
Ewing SarcomaXH8KJ8Gene-Disease Association
Sarcoma2B5F.3Gene-Disease Association
Ovarian Cancer2C73Gene-Disease Association